How to contact us

Feature requests / bug reports should be submitted via the official GitHub repository.
Questions should be addressed to: Alessio Milanese, Daniel Mende, Georg Zeller or Shinichi Sunagawa.


Microbial abundance, activity and population genomic profiling with mOTUs2

Alessio Milanese*, Daniel R Mende*, Lucas Paoli, Guillem Salazar, Hans-Joachim Ruscheweyh, Miguelangel Cuenca, Pascal Hingamp, Renato Alves, Paul I Costea, Luis P Coelho, T Sebastian B Schmidt, Alexandre Almeida, Alex L Mitchell, Robert D Finn, Jaime Huerta-Cepas, Peer Bork, Georg Zeller#, Shinichi Sunagawa#.

Nature Communications 10, Article number: 1014 (2019):

mOTUs: Profiling Taxonomic Composition, Transcriptional Activity and Strain Populations of Microbial Communities

Hans-Joachim Ruscheweyh*, Alessio Milanese*, Lucas Paoli, Anna Sintsova, Daniel R. Mende, Georg Zeller#, Shinichi Sunagawa#

Current Protocols 1, e218 (2021):

de.NBI survey

If you liked working with mOTUs, you could help us sustain our funding by taking 1 minute to answer this survey.

mOTUs v1

The codebase of the first version of mOTUs can be found here.


mOTUs is published under the GPL-3.0 license.